![]() |
Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
|
Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lj6g3v0227250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 194aa MW: 22669.2 Da PI: 9.0434 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 90.1 | 3.9e-28 | 17 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 l pG++F+Ptde lv++yLk++v +++l + +i+++d++++ePw Lp k +e++++f+ + + + + r++ sg W+ k k Lj6g3v0227250.1 17 LLPGYKFDPTDEVLVNFYLKRRVFAQPLLF-YIIPDFDVFQTEPWGLPgGdgK--IfNERKCFFYNTMGRDIE--NIDIRVAGSGQWRVMEKGK 105 579************************888.78***************53333..236789999999999876..4789999******999999 PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +vl +++++g ++tL f++++ +++t+Wvmhe+rl Lj6g3v0227250.1 106 DVLIPqSNQVIGRRNTLNFWEEQGACARRTKWVMHEFRL 144 99887577789**************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.89E-35 | 13 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 35.188 | 17 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-16 | 19 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 194 aa Download sequence Send to blast |
MEDLIMTYVD EDGSVRLLPG YKFDPTDEVL VNFYLKRRVF AQPLLFYIIP DFDVFQTEPW 60 GLPGGDGKIF NERKCFFYNT MGRDIENIDI RVAGSGQWRV MEKGKDVLIP QSNQVIGRRN 120 TLNFWEEQGA CARRTKWVMH EFRLALIANP SKMANWAIYR IFKNKNAKKV NNMQEGVIRK 180 APMLVMPEVF DFNA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-20 | 9 | 169 | 9 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-20 | 9 | 169 | 9 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-20 | 9 | 169 | 9 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-20 | 9 | 169 | 9 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-20 | 9 | 167 | 12 | 171 | NAC domain-containing protein 19 |
3swm_B | 1e-20 | 9 | 167 | 12 | 171 | NAC domain-containing protein 19 |
3swm_C | 1e-20 | 9 | 167 | 12 | 171 | NAC domain-containing protein 19 |
3swm_D | 1e-20 | 9 | 167 | 12 | 171 | NAC domain-containing protein 19 |
3swp_A | 1e-20 | 9 | 167 | 12 | 171 | NAC domain-containing protein 19 |
3swp_B | 1e-20 | 9 | 167 | 12 | 171 | NAC domain-containing protein 19 |
3swp_C | 1e-20 | 9 | 167 | 12 | 171 | NAC domain-containing protein 19 |
3swp_D | 1e-20 | 9 | 167 | 12 | 171 | NAC domain-containing protein 19 |
4dul_A | 1e-20 | 9 | 169 | 9 | 170 | NAC domain-containing protein 19 |
4dul_B | 1e-20 | 9 | 169 | 9 | 170 | NAC domain-containing protein 19 |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13413 | 11 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G13180.1 | 2e-31 | NAC domain containing protein 83 |